Re-running jobs for BMC Enoplid Paper

I’ve been re-running all the jobs for the BMC paper, now including the Rhabdolaimidae for the Enoplid-only tree.  However, inclusion of these sequences has caused some (previously resolved) nodes to become unresolved.  So I’ve modified two new RAxML jobs to include 1000 bootstrap replicates and another with an extended majority rule consensus tree.  I’m also re-running the Enoplid Bayes tree to run for 4 million generations.

Did something similar with the Nematomorpha tree (Bayesian), using the nexus file for the thesis job Holly_longjob2 (CIPRES Bayes folder on old Dell).  Running this for 3 million and 4 million generations.


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