QIIME

5/14/11, QIIME commands ran

GOM EPA_Illin_Testplate Uclust run at 99%

core_qiime_analyses.py -m /home/ubuntu/QIIMEmappingfile_GOMplate2_NoFL_MASTER.txt -o /home/ubuntu/qiime_output_GOMplate2_99/ -p /home/ubuntu/qiime_parameters_GOM.txt -i /home/ubuntu/EPA_Illin_Testplate_RawCombo.fna -q /home/ubuntu/EPA_Illin_Testplate_RawCombo.qual -f -a -c Habitat

Identify Chimeric sequences for Deepsea F04/NF1 Uclust at 99%

parallel_identify_chimeric_seqs.py -i Deepsea_uclust99_repset.fna -t /home/ubuntu/Silva_104_97_rep_set_and_taxonomy-1/Silva_taxa_mapping_104set_97_otus.txt -r /home/ubuntu/Silva_104_97_rep_set_and_taxonomy-1/silva_104_rep_set.fasta -m blast_fragments -O 8

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