Looking for Xeno DNA in the metagenome

Trying to figure out if we actually have any Xeno DNA in the sequencing run. First thing I’m doing is looking through the .jplace files for the Parfrey marker genes. The closest relatives for the Xenophyophore are Rhizaria, and the species included in the Parfrey study are listed below:

PhyloSift Marker

Rhizaria Species

14-3-3
  • Reticulomyxa filosa
40S (none)
Actin
  • Ammonia sp. T7
  • Ovammina opaca
  • Reticulomyxa filosa
  • Corallomyxa tenera
  • Massisteria marina
  • Gymnophrys sp
  • Bodomorpha minima
  • Dimorpha sp.
  • Capsellina sp.
  • Plasmodiophora brassicae
  • Proleptomonas faecicola
  • Thaumatomonas seravini
  • Gymnochlora stellata
  • Allogromia sp.
  • Gromia oviformis
  • Spongomonas
  • Lotharella globosa
  • Clathrulina elegans
  • Hedriocystis reticulata
  • Euglypha rotunda
  • Amphisorus hemprichii
  • Globobulimina turgida
  • Bonamia ostreae
  • Haplosporidium costale, H. louisiana, H. nelsoni
  • Minchinia chitonis
  • Urosporidium crescens
  • Lecythium sp.
  • Sorosphaera veronicae
  • Spongospora subterranea
  • Collozoum inerme
  • Thalassicolla pellucida
Atub
  • Ovammina opaca
  • Reticulomyxa filosa
  • Corallomyxa tenera
  • Massisteria marina
  • Gymnophrys sp
  • Bodomorpha minima
  • Dimorpha sp.
  • Capsellina sp.
  • Proleptomonas faecicola
  • Thaumatomonas seravini
  • Rhabdammina cornuta
Btub
  • Ovammina opaca
  • Reticulomyxa filosa
  • Corallomyxa tenera
  • Massisteria marina
  • Gymnophrys sp
  • Bodomorpha minima
  • Dimorpha sp.
  • Capsellina sp.
  • Plasmodiophora brassicae
  • Proleptomonas faecicola
  • Thaumatomonas seravini
  • Allogromia sp.
  • Rhabdammina cornuta
  • Gromia oviformis
  • Spongomonas
  • Astrammina rara
Ef1a
  • Corallomyxa tenera
Ef2
  • Corallomyxa tenera
Enolase
  • Reticulomyxa filosa
Grc5
  • Corallomyxa tenera
  • Reticulomyxa filosa
Hsp70cyt
  • Reticulomyxa filosa
Hsp90
  • Reticulomyxa filosa
  • Massisteria marina
  • Gymnophrys sp
MetK
  • Reticulomyxa filosa
Rps22a (none)
Rps23a
  • Gymnochlora stellata
Tsec61
  • Plasmodiophora brassicae
Advertisements

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out / Change )

Twitter picture

You are commenting using your Twitter account. Log Out / Change )

Facebook photo

You are commenting using your Facebook account. Log Out / Change )

Google+ photo

You are commenting using your Google+ account. Log Out / Change )

Connecting to %s

%d bloggers like this: