Running artsim B.anthracis data through PhyloSift

Running all the artsim B.anthracis data through PhyloSift (devel branch, master markers). On Edhar in /home/hollybik/gjospin-PhyloSift-119d3dd_devel_gitpull_20120815

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_0.1x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_0.1x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_0.5x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_0.5x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_0.01x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_0.01x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_0.25x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_0.25x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_1x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_1x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_2x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_2x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_5x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_5x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_10x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_10x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_25x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_25x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_50x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_50x_2.fq

./phylosift.pl all –debug –paired ~/grinder_sims/artsim_sim_reads/artsim_100x_1.fq ~/grinder_sims/artsim_sim_reads/artsim_100x_2.fq

Advertisements

Leave a Reply

Fill in your details below or click an icon to log in:

WordPress.com Logo

You are commenting using your WordPress.com account. Log Out / Change )

Twitter picture

You are commenting using your Twitter account. Log Out / Change )

Facebook photo

You are commenting using your Facebook account. Log Out / Change )

Google+ photo

You are commenting using your Google+ account. Log Out / Change )

Connecting to %s

%d bloggers like this: