Bayes Factor test testing

Trying to get the Bayes factor test to work.

On phylosift_devel_20121112/ folder, first ran all mode:

./phylosift.pl all –debug –bayes –marker_url=”http://edhar.genomecenter.ucdavis.edu/~koadman/phylosift_markers/devel” –paired tutorial_data/HMP_1.fastq.gz tutorial_data/HMP_2.fastq.gz -f –keep_search

Then ran

./phylosift.pl test_lineage –sample PS_temp/HMP_1.fastq.gz/ –marker concat –taxon 186802 –marker_url=”http://edhar.genomecenter.ucdavis.edu/~koadman/phylosift_markers/devel”

But getting an error saying “Error, requested taxa not found in gene family concat. Unable to apply Bayes factor test”. Added issue to GitHub, along with some other suggestions that would make Bayes factor tests more user-friendly.

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