Reverting to AWS SSHing

Running long jobs with StarCluster/iPython notebook is giving me issues (need to troubleshoot these with the QIIME forum)…so just to get data run I’m moving back to standard SSHing into Amazon AWS for the GOM illumina data:

pick_open_reference_otus.py -i /home/ubuntu/gom_data/GOM_concat1.7_rev_demulti_1to12_2.fna -o /home/ubuntu/gom_data/uclust_openref96_ref_27Aug -r /home/ubuntu/gom_data/99_Silva_111_rep_set_euk.fasta --parallel -O 8 -s 0.1 -p /home/ubuntu/gom_data/qiime_parameters_uclust96gom_aws27aug.txt --prefilter_percent_id 0.0
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