Final Aquarium Project data now ready!

Got the demultiplexed data back from all 4 Aquarium project runs, and now we’re going forward with OTU picking. Starting off with closed ref, to see what we get:

pick_closed_reference_otus.py -i /Users/hollybik/Desktop/Data/aquarium_project/All4MiseqRuns_demult_30Apr14/AQUEXP_all_MPF_2.fasta -o /Users/hollybik/Desktop/Data/aquarium_project/All4MiseqRuns_demult_30Apr14/uclust_closedref_30Apr14 -r /macqiime/greengenes/gg_13_8_otus/rep_set/97_otus.fasta -t /macqiime/greengenes/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt --parallel -O 2
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